 Developed by K. Ganesan and S. Parthasarathy* Dept. of Bioinformatics, Bharathidasan University, Tiruchirappalli 620 024, India * For correspondence bdupartha@gmail.com
The PredictFold H3P2 is a fold recognition server based on a five-dimensional substitution
matrix with three dimensions for the homologous structure (H3) and two dimensions for the probe sequence (P2).
This method uses residue classes and secondary structure information to predict the structural similarity of the
remote homologs which are sequentially distant[1]. Our implementation uses a library of SCOP fold profiles
from which a structurally similar profile is predicted for a twilight zone sequence.
Click here to use the PredictFold H3P2 server Click here to get supplementary data. Click here for a sample amino acid sequence to check PredictFold H3P2 server. Reference [1] Rice DW & Eisenberg D (1997) A 3D-1D Substitution Matrix for Protein Fold Recognition that Includes Predicted Secondary Structure of the SequenceJ Mol Biol, 267, 1026-1038.
© 2010 - S. Parthasarathy, Bharathidasan University, India |