A Simple Perl CGI

A Simple Perl CGI

Repeats regions & their secondary structure in the PDBID : 1r0a_A

>1r0a_A mol:protein length:558 Reverse transcriptase

169-303	EPFKkqNPDIVIYQYMDDLYVGsdlEIGQHRTKIEEL.RQHLLRWGlTTPDKKH..QKEPPFLWMgYELHPDKWTVQ.PIV..LPEKDSWTVNDICKLVGklnwASQIY.PGIKVRQlSKLLRG....TKALTEVIPLTE..EAELEL
344-479	EPFK..NLKTGKYARMRGAHTN...DVKQLTEAVQKItTESIVIWG.KTPKFKLpiQKETWETWW.TEYWQATWIPEwEFVntPPLVKLWYQLEKEPIVG....AETFYvDGAANRE.TKLGKAgyvtNKGRQKVVPLTNttNQKTEL
	HHHHxxHT TTEEEEEETTEEExxxEEESS HHHHHHxHHHHHHHHxHHHTT Bxx S EES xSSEEETTEEE xSSExxEEE SS BHHxxxxHHHHHxHHHHHHHxHTTSS xxxx HHHHTTTTTxxT TT
	ETTExxEEEEEE SSSB xxxHHHHHHHHHHHHxHHHHHHHHxSS EEExxESS HHHHHxHHHHH SSB x SxxEEE SS xxxxSS SxSS EE x TxxxxTTSEEEE SxxSS

Repeats regions & their secondary structure in the PDBID : 1r0a_B

>1r0a_B mol:protein length:429 Reverse transcriptase

169-229	EPFKkqNPDIVIYQYMDDLYVGsdlEIGQHRTKIEEL.RQHLLRWGlTTPDKKH..QKEPPFLW
344-401	EPFK..NLKTGKYARMRGAHTN...DVKQLTEAVQKItTESIVIWG.KTPKFKLpiQKETWETW
	HHHHxxHT TT EEEEETTEEExxxEEE S HHHHHHxHHHHHHHHxHHTTT xx S
	STT xxEEEEEEE STTTT xxxHHHHHHHHHHHHxHHHHHHHHxS EEExxESB HHHH
25-71	PLTEEKIKALVEiCTEMEKEgKISKIgPENPYNTPVFAIKKKDSTKW
294-337	PLTEEAELELAE.NREILKE.PVHGV.YYDPSKDLIAEIQKQGQGQW
	HHHHHHHHHxHHHHHHHxTTSEExEE TT BB EEEEE TTT
	HHHHHHHHHxHHHHTTSx TT x TTS EEEEEEEETTEE

Repeats regions & their secondary structure in the PDBID : 1r0a_L

>1r0a_L mol:protein length:211 monoclonal antibody (light chain)

10-40	SLSASLGD.RVTISCSASQDISSYL.NWYQQKP
63-95	SGSGSGTDySLTISNLEPEDIATYYcQQYSKFP
	EEEE TT x EEEEEE SS TT ExEEEEE S
	EEEEETTExEEEEESS TTT SEExEEEE SS

Repeats regions & their secondary structure in the PDBID : 1r0a_H

>1r0a_H mol:protein length:225 monoclonal antibody (heavy chain)

9-75	PG.IVQPSQPFRLTCTFSGFslSTSGIGVTWIRQPSGKGLEWLATIWWDDdnRYnpSLKSRLTVSKDT
136-197	PGsAAQTNSMVTLGCLVKGY..FPEPVTVTWNSGSLSSGVHTFPAVLQSD..LY..TLSSSVTVPSST
	SxEE TT EEEEEEEESSxx TTSTTEEEEEEEEETTS EEEEEEETxxTSxx EE TTTGGGE
	xSS SSEEEEEEEEEExxEBSS EEEETTTTB SSEEE EEETxxTExxEEEEEEEEEETT