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Repeats regions & their secondary structure in the PDBID : 1r9s_A

>1r9s_A mol:protein length:1733 DNA-directed RNA polymerase II largest subuni
1537-1554
VSSPGFSPTSPTYSPTSP
1558-1575
PTSPSYSPTSPSYSPTSP
1579-1596
PTSPSYSPTSPSYSPTSP
1600-1617
PTSPSYSPTSPSYSPTSP
1621-1638
PTSPSYSPTSPSYSPTSP
1642-1659
PTSPSYSPTSPSYSPTSP
1663-1680
PTSPSYSPTSPSYSPTSP
1684-1701
PTSPSYSPTSPNYSPTSP
1705-1719
PTSPGYSPGSPAYSP...
xxx
1463-1494
EDGQDGGVTPYSN.ESGLVNADLDVKDELMFSP
1501-1533
NDAMAGGFTAYGGaDYGEATSPFGAYGEAPTSP
x
x
995-1039
ENLLVLRGKNeIIQNAQRDAVTLFCCllrSRLATRR.VLQEYRL..TK
1062-1102
EMVGVLAAQS.IGEPATQMTLNTFHF...AGVASKK.VTSGVPR..LK
1103-1144
EILNV..AKN.MKTPSLTVYLEPGHA...ADQEQAKlIRSAIEHttLK
TS S SxHHHHHHHHHTTHHHHxxxHHHHHHSx HHHHHHxxTS
HHHHHHHHxHHTTTTT xxx xS HHHHxxHH
HHHHTxx SSx SS EEEEB SS SxxxS HHHHHxHHHHHHSxx E
308-333
IAGQPQ.ALQKSGRPvKSIRARLKGKE
353-378
ISGDPNlELDQVGVP.KSIAKTLTYPE
SSS x x SHHHHSSS
EEE TTxS TTEEEExEHHHHHHSEEE
1241-1277
RVVRPK......SLDAETEAEEDHMLKKIENTMLENITLRGVE
1281-1323
RVVMMKydrkvpSPTGEYVKEPEWVLETDGVNLSEVMTVPGID
E xxxxxx TTHHHHHHHHHHHH EEES T
EEEEEExxxxxxE EEE TTSSEEE EEEEEEES HHHHT
153-199
PSEDDPTQLVSR..GGCGNTQPTIRKDGLKLVGSWKKDRATGDADePEL
396-443
PNEHPGAKYVIRdsGDRIDLRYSKRAGDIQLQYGWKVERHIMDND.PVL
EE xxS B EEEEETTEEEEE x
TTSTT EEEEE xxTT EE TTS GGGS TT EEEEE TxT E
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Repeats regions & their secondary structure in the PDBID : 1r9s_B

>1r9s_B mol:protein length:1224 DNA-directed RNA polymerase II 140 kDa polype
628-716
TDAGRVY...RPLFIVEDDESLGHKELKVrkGHIAKLMATEYqdieGGF..EDVEEYTWSSlLNEGLVE......YIDAEEEESILIAMQPEdlEPAEAN
791-881
TMANILYypqKPLGTTRAMEYLKFRELPA..GQNAIVAIACY....SGYnqEDSMIMNQSS.IDRGLFRslffrsYMDQEKKYGMSITETFE..KPQRTN
S EExxxE EE SSSS S xx HHHHHHHHHHxxxxHHTxx x HHHHxxxxxxHHTTSB EEHHHHTT xx EESSS
S EEEESxxxS B SEE TTTTTTTGGGxxS SEEEEEEExxxxB xxSS S TTEEExEEHHHHHxxxxxxTTTT EEEEEEEEE xx S TT
141-169
DVPGRELkYELIAEESED.....DSESGKVFIGR
304-336
DVNDWQM.LEMLKPCVEDgfviqDRETALDFIGR
x xxxxx EEEE
TT HHHxHHHHHHHHHHxxxxxHTT SHHHHH
98-119
TKPMVNesdGVTHALYPQEARL
578-596
TRVFVN...GVWHGVHRNPARL
EEEEEExxx SSS EEE HHH
BEEEETxxxTEE EEBS HHHH
474-539
SSRAG.VSQVLNRYTYSS.TLSHLRRTNTPIGRDG.KLAKpRQLHNTHWGLVCPAETPEGQACGLVKNL
943-1010
STENGiVDQVLVTTNQDGlKFVKVRVRTTKIPQIGdKFAS.RHGQKGTIGITYRREDMPFTAEGIVPDL
x SEE SSHHHxHHHHHTEEE x x SS GGGTTTB SS SSTTTTTSEE
TT ExEEEEEEEEEETTxTEEEEEEEEEEEE xTT ExEE SSS EEEEEEEE TTTS EETTS
283-298
VIIFRALGIIPDGEIL
910-925
VIIGKTTPISPDEEEL
HHHHHHTT STTHHH
BSB EEE
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Repeats regions & their secondary structure in the PDBID : 1r9s_C

>1r9s_C mol:protein length:318 DNA-directed RNA polymerase II 45 kDa polypep
165-191
KEHAK.WGPAAAIEFEyDPWNKLKHTDY
195-221
QDSAKeWPQSKNCEYE.DPPNEGDPFDY
TT GGxG S EE x SSTTS
S HHHxHS GGGGGxS TT
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Repeats regions & their secondary structure in the PDBID : 1r9s_E

>1r9s_E mol:protein length:215 DNA-directed RNA polymerases I, II, and III 2
31-60
TQEEV.ELP.LEDFKAKYCDSMGRPQRKMMSF
65-96
TEESIsKFPdMGSLWVEFCDEPSVGVKTMKTF
STTTxS xHHHHHHHHB SSS B GGGT E
HHHHxHH xTT EEEEE SSSEE HHHHH
126-169
SIPPaTIETFNEAALVVNITHHELVpKHIRLSSDEKRelLKRYR
173-212
SQLP.RIQRADPVALYLGLKRGEVV.KIIRKSETSGR..YASYR
TSTTxSEEEE SHHHHS GGGSTTx EEEE TTHxxHHHHH
TTS xEE TT HHHHHHT TT EExEEEEE SSSSExxEEEEE
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Repeats regions & their secondary structure in the PDBID : 1r9s_F

>1r9s_F mol:protein length:155 DNA-directed RNA polymerases I, II, and III 2
10-23
DGneNFEDFDVEHF
140-151
DG..SFEDWSVEEL
xx
SSxx EEEEETTTS
63-75
QIRRKTLKEKAIP
119-131
RIAMKELAEKKIP
HHHHHHHTTT
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Repeats regions & their secondary structure in the PDBID : 1r9s_H

>1r9s_H mol:protein length:146 DNA-directed RNA polymerases I, II, and III 1
33-51
QDQcklTLDINVELFPVAA
52-70
QDSltvTIASSLNLEDTPA
TTxxx EEEEEE TTTS
S ExxxEEEE S
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