PredictSuperFam - Bharathidasan University, India

The PredictSuperFam-PB is a superfamily recognition server based on Protein Blocks. The protein Blocks are one of the Structural Alphabets used to describe regions of the protein backbone. Here, we present a protein superfamily recognition method based on Protein Blocks for the annotation of twilight zone sequences.

In our method, we align the predicted Protein Blocks of a query amino acid sequence with a library of assigned Protein Blocks of 1654 known superfamily representatives using the local pair-wise alignment.

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Reference

Suresh V, Ganesan K & Parthasarathy S (2012) A Protein Block based Fold Recognition method for the Annotation of Twilight Zone Sequences. Protein & Peptide Letters, 20(3) 249 - 254.

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